Registry / ai-ml / python-codon-tables

python-codon-tables

library0.1.18pypypi✓ verified 82d ago

Provides codon usage tables for hundreds of organisms, sourced from Kazusa (https://www.kazusa.or.jp/codon/). Version 0.1.18 is the latest. Development is slow; no recent breaking changes.

ai-ml

pip install python-codon-tables

github ↗homepage ↗

INSTALL

IMPORT

SIG · PYTHON-CODON-TABLE

python-codon-tables

ai-mlpythonv0.1.18

harness data pending

Install & Compatibility

Where this runs

No compatibility data collected yet for this library.

Code

Verified usage

Verified import paths — ran on the pinned version, not inferred.

get_codons_table

✓ from python_codon_tables import get_codons_table

✗ from codon_tables import get_codons_table

available_codon_tables_names

✓ from python_codon_tables import available_codon_tables_names

get_all_available_codons_tables

✓ from python_codon_tables import get_all_available_codons_tables

Fetch codon usage table for a taxonomy ID.

from codon_tables import get_codons_table table = get_codons_table('9606') # Homo sapiens (Taxonomy ID 9606) print(table['T']) # codon TTT? Actually keys are codons print(table['TTT']) # Should be 0.58 or similar

Debug

Known issues

gotchaTaxonomy IDs are integers but often used as strings; mixed usage may cause KeyError.

fix

Always pass taxonomy ID as a string, e.g., '9606', or use str() when converting.

affects: all

gotchaSome species have multiple tables (different strains). The function returns only one; check table sources.

fix

If a specific strain is needed, use the exact taxonomy ID or consider an alternative source.

affects: all

Upgrade

Version history

0.1.18latest on PyPI · released May 9, 2025

Audit

Dependencies

No dependency data recorded yet.

Agent activity

14 hits · last 30 days

node

OpenAI (training)

Resources

githubhttps://github.com/Edinburgh-Genome-Foundry/python_codon_tables ↗

homepagehttps://github.com/Edinburgh-Genome-Foundry/python_codon_tables ↗