multiqc

library1.35pypypi✓ verified 83d ago

MultiQC is a bioinformatics tool that aggregates results from many samples and tools into a single HTML report. Current version 1.35, released monthly.

devops

pip install multiqc

github ↗homepage ↗

INSTALL

IMPORT

SIG · MULTIQC

multiqc

devopspythonv1.35

harness data pending

Install & Compatibility

Where this runs

No compatibility data collected yet for this library.

Code

Verified usage

Verified import paths — ran on the pinned version, not inferred.

multiqc

✓ import multiqc

Runs MultiQC on the current directory, searching for analysis logs.

import multiqc multiqc.run(search_dir='.')

Debug

Known issues

breakingPython 3.14.1 is explicitly unsupported due to a known issue.

fix

Use Python 3.9-3.13 or 3.14.0/3.14.2+.

affects: 3.14.1

gotchaMultiQC expects a specific directory structure; running on a flat directory may miss files.

fix

Ensure input directories contain subfolders for each sample/tool.

affects: all

Errors

Common errors & fixes

ModuleNotFoundError: No module named 'multiqc'

MultiQC is not installed in the current Python environment.

fix

Run 'pip install multiqc'.

ValueError: Unknown tool / module

MultiQC doesn't recognize the analysis output format.

fix

Check that the tool is supported (see https://multiqc.info/docs/#supported-tools).

Upgrade

Version history

1.35latest on PyPI · released May 13, 2026

Audit

Dependencies

No dependency data recorded yet.

Agent activity

4 hits · last 30 days

node

Resources

githubhttps://github.com/MultiQC/MultiQC ↗

homepagehttps://github.com/MultiQC/MultiQC ↗