isa-rwval

library0.10.11pypypiunverified

ISA RWVal provides metadata tracking tools for managing diverse life science, environmental, and biomedical experiments. Current version 0.10.11, maintenance release with updated dependencies and Python 3.13 support.

data

pip install isa-rwval

github ↗package ↗homepage ↗docs ↗

INSTALL

IMPORT

SIG · ISA-RWVAL

isa-rwval

datapythonv0.10.11

Install

2.5s avg

Import

—

Disk

33MB

Pass rate

10/ 10

Env Coverage10 / 10

glibc

3.9–3.13

musl

3.9–3.13

Install & Compatibility

Where this runs

tested against v0.10.11 · pip install

no network on importno background threads

Install × environment matrix

Each cell = how many times install + import succeeded across repeated harness runs. Partial = flaky.
glibc = Debian/Ubuntu slim · musl = Alpine Linux

musl

py 3.10–3.95 runs

installs and imports cleanly · install 0.0s · import 0.000s · 32.9MB

glibc

py 3.10–3.95 runs

installs and imports cleanly · install 2.5s · import 0.000s · 33MB

33MB installed

● package 33MB

Code

Verified usage

Verified import paths — ran on the pinned version, not inferred.

ISAInvestigation

✓ from isatools.model import ISAInvestigation

✗ from isatools.model import ISAInvestigation

Load an ISA JSON file into an ISAInvestigation object.

from isatools import isa_json from isatools.model import ISAInvestigation # Load an ISA JSON file with open('path/to/file.json', 'r') as f: investigation = isa_json.load(f) print(investigation.title) # or 'No title' if not set print('ISA investigation loaded successfully')

isarwval --version

Debug

Known issues

breakingPython 2 support dropped in v0.10.10. Python >=3.9 required since v0.10.11.

fix

Upgrade Python to 3.9+ and install latest version.

affects: <0.10.10

deprecatednetworkx pin was relaxed; older pins (e.g., 2.5) are incompatible with NumPy 2.0.

fix

Update to v0.10.11 or manually upgrade networkx to compatible version.

affects: 0.10.10 and earlier

gotchaISA JSON loading expects specific schema; use `isatools.isajson.load` not raw json.load

fix

Use `from isatools import isa_json` then `isa_json.load(filepath)`.

affects: all

Upgrade

Version history

0.10.11latest on PyPI · released Jun 19, 2025

Audit

Dependencies

networkxrequiredRelaxed pin requirement in 0.10.11 to avoid NumPy 2.0 incompatibility

Agent activity

7 hits · last 30 days

node

Resources

githubhttps://github.com/ISA-tools/isa-rwval ↗

packagehttps://pypi.org/project/isa-rwval/ ↗

homepagehttps://isa-tools.org/ ↗

docshttps://isa-tools.org/isa-api/ ↗