hadoop-bam

library7.10.0javamavenunverified

A Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework.

<dependency>
  <groupId>org.seqdoop</groupId>
  <artifactId>hadoop-bam</artifactId>
  <version>7.10.0</version>
</dependency>

github ↗homepage ↗docs ↗

INSTALL

IMPORT

SIG · HADOOP-BAM

hadoop-bam

networkingjavav7.10.0

harness data pending

Install & Compatibility

Where this runs

No compatibility data collected yet for this library.

Code

Verified usage

Verified import paths — ran on the pinned version, not inferred.

BAMInputFormat

✓ org.seqdoop.hadoop_bam.BAMInputFormat

Configures a Hadoop job to read BAM files using Hadoop-BAM.

import org.seqdoop.hadoop_bam.BAMInputFormat; import org.apache.hadoop.conf.Configuration; import org.apache.hadoop.fs.Path; import org.apache.hadoop.mapreduce.Job; public class Example { public static void main(String[] args) throws Exception { Job job = Job.getInstance(new Configuration()); BAMInputFormat.addInputPath(job, new Path("input.bam")); } }

Debug

Known issues

No known issues recorded.

Upgrade

Version history

7.10.0latest on Maven

Audit

Dependencies

No dependency data recorded yet.

Agent activity

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node

Resources

githubhttps://github.com/HadoopGenomics/Hadoop-BAM ↗

homepagehttp://sourceforge.net/projects/hadoop-bam/ ↗

docshttps://appdoc.app/artifact/org.seqdoop/hadoop-bam/ ↗