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ga4gh-gks-metaschema

library0.3.2pypypiunverified

Tools for working with the GA4GH Genomic Knowledge Standards (GKS) meta-schema, including schema parsing, validation, and code generation. Current version: 0.3.2, requires Python >=3.12. Release cadence: irregular, with minor fixes and CI improvements.

data serialization

pip install ga4gh-gks-metaschema

github ↗package ↗docs ↗changelog ↗

INSTALL

IMPORT

SIG · GA4GH-GKS-METASCHE

ga4gh-gks-metaschema

datapythonv0.3.2

harness data pending

Install & Compatibility

Where this runs

No compatibility data collected yet for this library.

Code

Verified usage

Verified import paths — ran on the pinned version, not inferred.

SchemaParser

✓ from ga4gh.gks_metaschema import SchemaParser

✗ from gks_metaschema import SchemaParser

Basic usage: parse a GKS meta-schema YAML file into Python objects.

from gks_metaschema import SchemaParser # Load a metaschema YAML file parser = SchemaParser() schema = parser.parse('path/to/schema.yaml') print(schema)

gks --version

Debug

Known issues

gotchaThe import path uses underscores (gks_metaschema), not hyphens (ga4gh-gks-metaschema). A common mistake is using the PyPI name directly in imports.

fix

Use 'from gks_metaschema import ...'.

affects: >=0.1.0

breakingVersion 0.3.0 dropped Python 3.11 support; requires Python >=3.12.

fix

Ensure your environment uses Python 3.12 or later.

affects: >=0.3.0

deprecatedThe 'build_inheritance_dicts' function had a length check removed in version 0.3.2. Code relying on that check may behave differently.

fix

Update to 0.3.2 and adjust any code that assumed the length check.

affects: 0.3.0 - 0.3.1

Upgrade

Version history

0.3.2latest on PyPI · released Mar 13, 2025

Audit

Dependencies

No dependency data recorded yet.

Agent activity

10 hits · last 30 days

node

Resources

githubhttps://github.com/ga4gh/gks-metaschema ↗

packagehttps://pypi.org/project/ga4gh-gks-metaschema/ ↗

docshttps://github.com/ga4gh/gks-metaschema ↗

changeloghttps://github.com/ga4gh/gks-metaschema/releases ↗