cg

library86.7.3pypypiunverified

Clinical Genomics command center (cg) is a Python-based tool for managing and automating clinical genomics workflows. Current version is 85.11.1, with a release cadence of several minor versions per month. Requires Python <3.13,>=3.11.

workflow devops data

pip install cg

package ↗

INSTALL

IMPORT

SIG · CG

workflowpythonv86.7.3

Install

21.7s avg

Import

—

Disk

332MB

Pass rate

10/ 10

Env Coverage10 / 10

glibc

3.9–3.13

musl

3.9–3.13

Install & Compatibility

Where this runs

tested against v75.2.5 · pip install

no network on importno background threads

Install × environment matrix

Each cell = how many times install + import succeeded across repeated harness runs. Partial = flaky.
glibc = Debian/Ubuntu slim · musl = Alpine Linux

musl

py 3.10–3.95 runs

installs and imports cleanly · install 0.0s · import 0.000s · 319.3MB

glibc

py 3.10–3.95 runs

installs and imports cleanly · install 21.7s · import 0.000s · 310MB

332MB installed

● package 332MB

Code

Verified usage

Verified import paths — ran on the pinned version, not inferred.

CGConfig

✓ from cg.apps.cg_config import CGConfig

✗ from cg.apps.cg_config import CGConfig

Initialize CGConfig and Store, then perform operations like listing orders.

from cg.apps.cg_config import CGConfig from cg.store import Store config = CGConfig() store = Store(config) # Example: list orders orders = store.orders() print(orders)

cg --version

Debug

Known issues

breakingIn version 80+, the store API was restructured: Store is now a class, and connections are managed via CGConfig.

fix

Use `from cg.store import Store` and pass a `CGConfig` instance.

affects: >=80.0.0

deprecatedOld CLI entry points like `cg orders` have been moved to `cg workflow ...` subcommands.

fix

Use `cg workflow orders` instead of `cg orders`.

affects: >=85.0.0

gotchaThe package requires Python <3.13,>=3.11. Installing with Python 3.13 may fail silently or produce runtime errors.

fix

Ensure Python version is between 3.11 and 3.12 (exclusive of 3.13).

affects: >=85.0.0

Upgrade

Version history

86.7.3latest on PyPI · released Jun 17, 2026

Audit

Dependencies

No dependency data recorded yet.

Agent activity

22 hits · last 30 days

node

OpenAI (training)

Resources

packagehttps://pypi.org/project/cg/ ↗