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bio-samtools

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library2.6.2rbrubygemsunverified

Binder of samtools for Ruby, on top of FFI, providing support for BAM files.

utility

gem install bio-samtools

github ↗homepage ↗docs ↗

INSTALL

IMPORT

SIG · BIO-SAMTOOLS

bio-samtools

utilityrubyv2.6.2

harness data pending

Install & Compatibility

Where this runs

No compatibility data collected yet for this library.

Code

Verified usage

Verified import paths — ran on the pinned version, not inferred.

Bio::Samtools

✓ require 'bio-samtools'

Read BAM file and fetch reads in a region

require 'bio-samtools' # Open a BAM file bam = Bio::DB::Sam.open('example.bam') # Fetch reads in a region bam.fetch('chr1:1000-2000').each do |read| puts read.qname end

Debug

Known issues

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Upgrade

Version history

2.6.2latest on RubyGems

Audit

Dependencies

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