Registry / other / bio-blastxmlparser

bio-blastxmlparser

library2.0.4rbrubygemsunverified

Fast big data BLAST XML parser and library; this libxml2 based version is 50x faster than BioRuby and comes with a nice CLI.

gem install bio-blastxmlparser

INSTALL

IMPORT

SIG · BIO-BLASTXMLPARSER

bio-blastxmlparser

otherrubyv2.0.4

harness data pending

Install & Compatibility

Where this runs

No compatibility data collected yet for this library.

Code

Verified usage

Verified import paths — ran on the pinned version, not inferred.

Bio::BlastXMLParser

✓ require 'bio-blastxmlparser'

Parse BLAST XML results

require 'bio-blastxmlparser' parser = Bio::BlastXMLParser.new('results.xml') parser.each { |hit| puts hit.definition }

Debug

Known issues

gotchaRequires libxml2 system library

fix

Install libxml2-dev on Linux or libxml2 on macOS

affects: >= 2.0.0

Upgrade

Version history

2.0.4latest on RubyGems

Audit

Dependencies

No dependency data recorded yet.

Agent activity

17 hits · last 30 days

node