aot-biomaps

import os from aot_biomaps import Biomap # NOTE: This library heavily relies on specific folder structures and calibration files. # Replace these with actual paths to your AOT data and calibration files. # Dummy paths are used here for demonstration purposes. dummy_folder_path = os.path.join(os.path.dirname(__file__), 'dummy_aot_data') dummy_calibration_path = os.path.join(os.path.dirname(__file__), 'dummy_calibration.txt') # Create dummy files for the example to run without FileNotFoundError # In a real scenario, these would be your actual AOT measurement data. if not os.path.exists(dummy_folder_path): os.makedirs(dummy_folder_path) with open(os.path.join(dummy_folder_path, 'measurement_0001.txt'), 'w') as f: f.write('0 0 0\n1 1 1') with open(dummy_calibration_path, 'w') as f: f.write('1.0 0.0 0.0\n0.0 1.0 0.0\n0.0 0.0 1.0') try: # Initialize the Biomap object my_biomap = Biomap(folder_path=dummy_folder_path, calibration_path=dummy_calibration_path) # Example: Process data (replace with actual processing steps) # These methods might require specific data formats to succeed print(f"Biomap initialized with shape: {my_biomap.img_shape}") # Attempt to load and process data (these might fail without actual AOT data) if hasattr(my_biomap, 'load_data'): # This method is not directly available in current __init__ or Biomap class # Actual usage might involve calling processing methods after init print("No direct 'load_data' method found as an example, proceeding with other calls.") # If the Biomap class has methods like 'get_biomap' or 'calculate_something' if hasattr(my_biomap, 'get_biomap'): print("Calling get_biomap (placeholder)") # result = my_biomap.get_biomap() # Uncomment with real data print("Biomap object created successfully. Further methods depend on your AOT data structure.") except Exception as e: print(f"An error occurred during quickstart: {e}") print("Please ensure your 'folder_path' contains valid AOT measurement files and 'calibration_path' points to a correct calibration file.") # Clean up dummy files os.remove(os.path.join(dummy_folder_path, 'measurement_0001.txt')) os.remove(dummy_calibration_path) os.rmdir(dummy_folder_path)