gget-mcp

stdionone★ 27development

An MCP server for the gget bioinformatics library, enabling standardized access to genomics tools and databases.

Install

How to run this server

[ { "cmd": "npx (you", "imports": [] } ]

server path: gget-mcp

Tools

What this server exposes

gget search

Search for genes, proteins, or other biological entities using gget.

gget info

Retrieve detailed information about a specific gene or protein.

gget seq

Fetch nucleotide or protein sequences for a given identifier.

gget blast

Perform BLAST searches against sequence databases.

gget enrichr

Perform gene set enrichment analysis using Enrichr.

gget archs4

Retrieve gene expression data from ARCHS4.

gget pdb

Fetch protein structure data from the Protein Data Bank.

gget muscle

Perform multiple sequence alignment using MUSCLE.

gget diamond

Run DIAMOND for fast protein sequence alignment.

gget setup

Configure and set up gget databases and dependencies.

Configuration

Environment & auth

authnone

envGEMINI_API_KEY

Resources