MCP Servers / other / BWA (Burrows-Wheeler Aligner)

BWA (Burrows-Wheeler Aligner)

noneother

An MCP server for the BWA sequence alignment tool.

Install

How to run this server

[ { "cmd": "pip install -e", "imports": [] } ]

server path: bwa-burrows-wheeler-aligner

Tools

What this server exposes

bwa_index

Create an index for a reference genome.

bwa_mem

Align reads using the BWA-MEM algorithm.

bwa_aln

Find SA coordinates with the BWA-backtrack algorithm.

bwa_samse

Generate single-end alignments in SAM format.

bwa_sampe

Generate paired-end alignments in SAM format.

Configuration

Environment & auth

authnone

Resources