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PubTator MCP Server

stdionone★ 9search

A server for biomedical literature annotation and relationship mining, based on PubTator3.

Install

How to run this server

[ { "cmd": "npx -y @smithery/cli@latest", "imports": [] } ]

server path: pubtator-mcp-server

Tools

What this server exposes

export_publications

Export PubTator annotation results for specified PMID literature in multiple formats (pubtator, biocxml, biocjson)

find_entity_id

Query standard identifiers for biological concepts through free text, supporting gene, disease, chemical, species, and mutation concepts

Configuration

Environment & auth

authnone

Resources