PDB MCP Server

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Access the Protein Data Bank (PDB) for 3D structures of proteins and nucleic acids, with tools for structural analysis and comparison.

Install

How to run this server

No install command recorded.

server path: pdb-mcp-server

Tools

What this server exposes

search_structures

Search PDB database for protein structures by keyword, protein name, or PDB ID

get_structure_info

Get detailed information for a specific PDB structure

download_structure

Download structure coordinates in various formats (PDB, mmCIF, mmTF, XML)

search_by_uniprot

Find PDB structures associated with a UniProt accession

get_structure_quality

Get structure quality metrics and validation data

Configuration

Environment & auth

authnone

Resources